Review



contig-assembly hybrid scaffolds  (BioNano Genomics)

 
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
    • 90
      Buy from Supplier

    Structured Review

    BioNano Genomics contig-assembly hybrid scaffolds
    Experimental <t> assembly </t> comparison.
    Contig Assembly Hybrid Scaffolds, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/contig-assembly+hybrid+scaffolds/contig+assembly+hybrid+scaffolds/pmc10687446-214-9-8
    Average 90 stars, based on 1 article reviews
    contig-assembly hybrid scaffolds - by Bioz Stars, 2026-10
    90/100 stars

    Images

    1) Product Images from "Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning"

    Article Title: Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning

    Journal: Frontiers in Plant Science

    doi: 10.3389/fpls.2023.1184112

    Experimental assembly comparison.
    Figure Legend Snippet: Experimental assembly comparison.

    Techniques Used: Comparison, Software

    Haplotype switching. Haplotype switching was illustrated by aligning TrioCanu binned HiFi reads of parent A (HDA149) and parent B (HDA330) to each contig level genome assembly. The x-axis shows 1 Mb windows across contigs. The contigs were arranged from longest to shortest. Vertical gray lines show the boundaries of contigs. The y-axis shows the difference in percent coverage of the binned reads over a 1 Mb window of the given assembly. Higher coverage of HDA149 is shown in pink and higher coverage of HDA330 is shown in blue. (A) Hifiasm HDA149 assembly with trio-binning. (B) Hifiasm HDA330 assembly with trio-binning. (C) TrioCanu HDA149 assembly with trio-binning. (D) TrioCanu HDA330 assembly with trio-binning. (E) Hifiasm haplotype 1 assembly in default run mode, without parental k-mers for trio-binning. (F) Hifiasm haplotype 2 assembly in default run mode, without parental k-mers for trio-binning.
    Figure Legend Snippet: Haplotype switching. Haplotype switching was illustrated by aligning TrioCanu binned HiFi reads of parent A (HDA149) and parent B (HDA330) to each contig level genome assembly. The x-axis shows 1 Mb windows across contigs. The contigs were arranged from longest to shortest. Vertical gray lines show the boundaries of contigs. The y-axis shows the difference in percent coverage of the binned reads over a 1 Mb window of the given assembly. Higher coverage of HDA149 is shown in pink and higher coverage of HDA330 is shown in blue. (A) Hifiasm HDA149 assembly with trio-binning. (B) Hifiasm HDA330 assembly with trio-binning. (C) TrioCanu HDA149 assembly with trio-binning. (D) TrioCanu HDA330 assembly with trio-binning. (E) Hifiasm haplotype 1 assembly in default run mode, without parental k-mers for trio-binning. (F) Hifiasm haplotype 2 assembly in default run mode, without parental k-mers for trio-binning.

    Techniques Used:

    Related Articles

    Comparison:

    Article Title: Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning
    Article Snippet: Step 4 scaffolded the assemblies to the corresponding Bionano contig-assembly hybrid scaffolds using Ragtag ‘scaffold’.

    Software:

    Article Title: Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning
    Article Snippet: Step 4 scaffolded the assemblies to the corresponding Bionano contig-assembly hybrid scaffolds using Ragtag ‘scaffold’.



    Similar Products

    contig-assembly hybrid scaffolds  (BioNano Genomics)
    90
    BioNano Genomics contig-assembly hybrid scaffolds
    Experimental <t> assembly </t> comparison.
    Contig Assembly Hybrid Scaffolds, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/contig-assembly+hybrid+scaffolds/contig+assembly+hybrid+scaffolds/pmc10687446-214-9-8
    Average 90 stars, based on 1 article reviews
    contig-assembly hybrid scaffolds - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Experimental assembly comparison.

    Journal: Frontiers in Plant Science

    Article Title: Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning

    doi: 10.3389/fpls.2023.1184112

    Figure Lengend Snippet: Experimental assembly comparison.

    Article Snippet: Step 4 scaffolded the assemblies to the corresponding Bionano contig-assembly hybrid scaffolds using Ragtag ‘scaffold’.

    Techniques: Comparison, Software

    Haplotype switching. Haplotype switching was illustrated by aligning TrioCanu binned HiFi reads of parent A (HDA149) and parent B (HDA330) to each contig level genome assembly. The x-axis shows 1 Mb windows across contigs. The contigs were arranged from longest to shortest. Vertical gray lines show the boundaries of contigs. The y-axis shows the difference in percent coverage of the binned reads over a 1 Mb window of the given assembly. Higher coverage of HDA149 is shown in pink and higher coverage of HDA330 is shown in blue. (A) Hifiasm HDA149 assembly with trio-binning. (B) Hifiasm HDA330 assembly with trio-binning. (C) TrioCanu HDA149 assembly with trio-binning. (D) TrioCanu HDA330 assembly with trio-binning. (E) Hifiasm haplotype 1 assembly in default run mode, without parental k-mers for trio-binning. (F) Hifiasm haplotype 2 assembly in default run mode, without parental k-mers for trio-binning.

    Journal: Frontiers in Plant Science

    Article Title: Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning

    doi: 10.3389/fpls.2023.1184112

    Figure Lengend Snippet: Haplotype switching. Haplotype switching was illustrated by aligning TrioCanu binned HiFi reads of parent A (HDA149) and parent B (HDA330) to each contig level genome assembly. The x-axis shows 1 Mb windows across contigs. The contigs were arranged from longest to shortest. Vertical gray lines show the boundaries of contigs. The y-axis shows the difference in percent coverage of the binned reads over a 1 Mb window of the given assembly. Higher coverage of HDA149 is shown in pink and higher coverage of HDA330 is shown in blue. (A) Hifiasm HDA149 assembly with trio-binning. (B) Hifiasm HDA330 assembly with trio-binning. (C) TrioCanu HDA149 assembly with trio-binning. (D) TrioCanu HDA330 assembly with trio-binning. (E) Hifiasm haplotype 1 assembly in default run mode, without parental k-mers for trio-binning. (F) Hifiasm haplotype 2 assembly in default run mode, without parental k-mers for trio-binning.

    Article Snippet: Step 4 scaffolded the assemblies to the corresponding Bionano contig-assembly hybrid scaffolds using Ragtag ‘scaffold’.

    Techniques: